Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs150879403 | chr3:53937264 | C/T | 4.11E-15 | 489 | 15.9 | 17.23 | 10.35 | KM Plot |
| THCA | rs150902738 | chr10:71867963 | CA/C | 0 | 486 | 16.63 | 13.83 | 8.55 | KM Plot |
| THCA | rs151096467 | chr1:220784142 | A/G | 2.55E-5 | 488 | 15.9 | 16.97 | 17.17 | KM Plot |
| THCA | rs151111588 | chr19:43562391 | G/C | 0.000237 | 489 | 15.3 | 18.93 | 10.08 | KM Plot |
| THCA | rs1511570 | chr3:139260828 | A/G | 3.23E-5 | 490 | 15.87 | 17.1 | 13.08 | KM Plot |
| THCA | rs1511571 | chr3:139260792 | T/C | 3.31E-5 | 490 | 15.9 | 17.07 | 13.08 | KM Plot |
| THCA | rs151222 | chr16:20674492 | C/G | 3.41E-6 | 490 | 20.68 | 16.4 | 15.9 | KM Plot |
| THCA | rs151309 | chr16:20661885 | T/C | 4.03E-6 | 489 | 15.9 | 16.4 | 20.68 | KM Plot |
| THCA | rs1513324 | chr3:111269549 | C/G | 6.5E-5 | 490 | 16.27 | 14.82 | 16.55 | KM Plot |
| THCA | rs1513325 | chr3:111263826 | G/A | 6.66E-5 | 487 | 16.23 | 14.97 | 16.55 | KM Plot |
| THCA | rs1515474 | chr3:157553508 | C/T | 3.92E-5 | 490 | 15.2 | 17.63 | 21 | KM Plot |
| THCA | rs1516500 | chr3:155685093 | C/T | 0.000273 | 486 | 11.98 | 14.73 | 16.63 | KM Plot |
| THCA | rs1525813 | chr7:64255319 | T/C | 9.66E-8 | 489 | 16.63 | 14.33 | 14.27 | KM Plot |
| THCA | rs1531089 | chr1:219542972 | C/T | 2.58E-6 | 490 | 15.9 | 16.42 | 10.88 | KM Plot |
| THCA | rs1534534 | chr9:94701825 | C/T | 1.73E-5 | 475 | 15.67 | 17.1 | 13.32 | KM Plot |